All Projects

Not a comprehensive list, more to come soon!

🦦

ethology

A Python package to mix-and-match computer vision tools for animal behaviour data analysis.

Computer VisionDeep LearningPyTorchMLflowOpenCVxarray
See more
movement preview

movement

A Python toolbox to analyse trajectories from animal pose estimation in space and time.

xarraynapari
See more
Tracking zebras with a moving drone preview

Tracking zebras with a moving drone

A prototype pipeline to extract from drone video data the trajectories of moving animals relative to the ground.

Structure-from-MotionBlenderOpenDroneMapDocker
See more
brainglobe asv benchmarks preview

brainglobe asv benchmarks

Benchmarking realistic user-workflows for brainglobe's suite of tools using asv.

asvGitHub Actions
See more
🐝

beekeeper

Create metadata files for your animal behaviour videos from a browser-based dashboard

dashplotly
See more
¡Charlas RSE en español! preview

¡Charlas RSE en español!

A monthly seminar series to promote and showcase the role of Research Software Engineers across the Spanish-speaking world. In collaboration with Carlos Gavidia Calderón (@cptanalatriste).

se habla español
See more
🌀

Blender gut randomiser

A Blender add-on to define realistic and diverse gut geometries for synthetic datasets.

BlenderPython
See more
🟣

s2fft

Accelerated spherical transforms with JAX

JAX
See more
🧹

sleap-sweep

A Python package to run hyperparameter sweeps for SLEAP models

PythonOptunaSLEAP
See more