All Projects

Not a comprehensive list, more to come soon!

🦦

ethology

A Python package to mix-and-match computer vision tools for animal behaviour data analysis.

Computer VisionDeep LearningPyTorchMLflowOpenCVxarray
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movement preview

movement

A Python toolbox to analyse trajectories from animal pose estimation in space and time.

xarraynapari
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Tracking moving zebras from drone video data preview

Tracking moving zebras from drone video data

A prototype pipeline to compute the trajectories of moving animals captured with drone imagery.

Structure-from-MotionBlenderOpenDroneMapDocker
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brainglobe asv benchmarks preview

brainglobe asv benchmarks

Benchmarking realistic user-workflows for brainglobe's suite of tools using asv.

asvGitHub Actions
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🐝

beekeeper

Create metadata files for your animal behaviour videos from a browser-based dashboard

dashplotly
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¡Charlas RSE en español! preview

¡Charlas RSE en español!

A monthly seminar series to promote and showcase the role of Research Software Engineers across the Spanish-speaking world. In collaboration with Carlos Gavidia Calderón (@cptanalatriste).

se habla español
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🌀

Blender gut randomiser

A Blender add-on to define realistic and diverse gut geometries for synthetic datasets.

BlenderPython
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🟣

s2fft

Accelerated spherical transforms with JAX

JAX
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🧹

sleap-sweep

A Python package to run hyperparameter sweeps for SLEAP models

PythonOptunaSLEAP
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